PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595821.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 386aa    MW: 42239.2 Da    PI: 9.3247
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.73e-1819109273
        trihelix   2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                     Wt +e+++Liea++ ++er  r++                    ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r +
  XP_013595821.1  19 WTLNETMVLIEAKKMDDERRMRRSiglpapeqsqdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERGRLE 109
                     **************666666665445556666666666777669999***************************************99743 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7951194IPR017877Myb-like domain
PfamPF138371.1E-1318109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MADQSGGLGL TREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAPEQ SQDSRSSSGN  60
KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERGRLES SFASASSSSA  120
AAETGSYWKM EKSERKERNL PSNMLPQTYQ ALFDVVESKT HPSSTAATAI TAAVAAAAAE  180
TGSGNGSGGG LHIPKLIQQQ GLGFVPQHQM IQPPVLLPLP RPPPPPSQPL QPRTLLLPPP  240
PQPSFHAQPI LPTKDSSSDS DTSEHSDTSP AKRRRTKPTT AAGTSGGGGG GNAEMEEAES  300
VVAAALSRSA SVIANAFRES EERQDRRHKE VMSLKERRLK IEESNVEMNR EGMSGLVEAI  360
NKLASSMFAL ASSTSSHNNQ HQGGPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595821.10.0PREDICTED: uncharacterized protein LOC106304000 isoform X1
TrEMBLA0A0D3D5M20.0A0A0D3D5M2_BRAOL; Uncharacterized protein
STRINGBra014906.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-112Trihelix family protein